PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma317g00020.1
Common NameZOSMA_317G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 234aa    MW: 26726 Da    PI: 6.3948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma317g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32.1e-25112171258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYGqK++ g+++p++Y+rCt++   +C ++k+v+ s+ d +v++itY geH +
  Zosma317g00020.1 112 EDGYHWRKYGQKDILGTKHPKGYFRCTYSqsrQCLATKHVQMSDGDRTVFDITYFGEHSC 171
                       8**************************998899*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.243106170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-24108171IPR003657WRKY domain
SuperFamilySSF1182906.54E-23110171IPR003657WRKY domain
SMARTSM007746.9E-34111173IPR003657WRKY domain
PfamPF031062.0E-23112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENNLIAEIN NSRAFVKKLQ LLLDQQDLHC LDISSIKSLV NSLTTSIENT MTCTQFAIFQ  60
GEQIKQEESP SSVNDTPRVQ RSKKRIRRSK EKFNRHVKVT VNLAKGLAES LEDGYHWRKY  120
GQKDILGTKH PKGYFRCTYS QSRQCLATKH VQMSDGDRTV FDITYFGEHS CFPGESKNKE  180
TVPPDHDVIT ENASLSFLDT SVLSLPDMSE LFCQDYLTLE NEFSFDDANY YLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18107171468OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9D01e-175A0A0K9P9D0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-25WRKY family protein