PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma317g00200.1
Common NameZOSMA_317G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 231aa    MW: 25129.2 Da    PI: 6.5234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma317g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-174996152
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      s y+GVr ++ +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+  
  Zosma317g00200.1 49 SSYHGVRMRS-WGKWVSEIREPKK---KSRIWLGTFPTAKMAARAHDVAAMT 96
                      679****998.**********854...6********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-2049108IPR016177DNA-binding domain
CDDcd000186.42E-3049109No hitNo description
PfamPF008476.4E-114999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3050108IPR001471AP2/ERF domain
PROSITE profilePS5103222.0150107IPR001471AP2/ERF domain
SMARTSM003801.7E-3450113IPR001471AP2/ERF domain
PRINTSPR003672.1E-95162IPR001471AP2/ERF domain
PRINTSPR003672.1E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MANSGKNIYK SGQETTINNS VASSTALESK KKINKKSSGA TAAPTTATSS YHGVRMRSWG  60
KWVSEIREPK KKSRIWLGTF PTAKMAARAH DVAAMTVKGS SAILNFPELA GSLPRPASTS  120
PRDIRAAAVK AATMDSLAQE ELCEVFQLPT ILDLDSSPAS FSFNDYLYSI DTTLDSLPYT  180
FPWHGGSVDV DASFLSDYHY ELLQEEMIDS AGVMLQTSSS YLWDGRMDNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16491071372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409377.13e-47PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_009409378.13e-47PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_013462028.12e-47dehydration-responsive element-binding protein 3
TrEMBLA0A0K9P9H11e-169A0A0K9P9H1_ZOSMR; Dehydration-responsive element-binding protein 3
STRINGBra008952.1-P2e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-48ERF family protein