PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma317g00250.1
Common NameZOSMA_317G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 363aa    MW: 39798.3 Da    PI: 7.6255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma317g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13126170347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ +++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  Zosma317g00250.1 126 PWTEEEHRRFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 170
                       7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.1E-4221IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.176119175IPR017930Myb domain
SuperFamilySSF466895.91E-17121176IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-19122174IPR006447Myb domain, plants
SMARTSM007171.3E-8123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-11124169IPR009057Homeodomain-like
PfamPF002491.7E-10126170IPR001005SANT/Myb domain
CDDcd001671.04E-8126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT KTGLPAVGNG TGTTKTDVGG GLRIFGVRLT EGGGSMIMKK  60
SASMGCISHY SMMTTTPTSS QNQFDSPSSD PMEGDNDNDV DEYTSDDPNH VSCSLNRRGE  120
RKKGIPWTEE EHRRFLIGLQ KLGKGDWRGI ARNYVVSRTP TQVASHAQKY FIRQSNASRR  180
KRRSSLFDMV PDMVPATEEA YYGSLPESQS TNSLTSLDHS QERESIHSEI VIEQSPMELQ  240
ENGSFASLPP LAPAFYPYIP VPYPYWSPNV SMPVDDEIAC KTHVVLRPTP ILPKNNSHVD  300
ELARMSNLSI KESSINNRLE PSELSSKLLS PSSSRQSAFH ANPAVARANL DQGNGSNAIH  360
AV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791498.11e-114transcription factor MYBS3-like
TrEMBLA0A0K9P9H60.0A0A0K9P9H6_ZOSMR; Myb transcription factor
STRINGXP_008791498.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-79MYB_related family protein