PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g00150.1
Common NameZOSMA_31G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 212aa    MW: 23370.7 Da    PI: 8.8267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05129151123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Zosma31g00150.1 129 HECSICGLEFSSGQALGGHMRRH 151
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.36183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.12E-86183No hitNo description
PfamPF139121.2E-106184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8066188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-8124151No hitNo description
PfamPF139122.5E-12128152IPR007087Zinc finger, C2H2
SMARTSM003550.015129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452129151IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
METNLKEGIM GRNVYVKRRR TKKKVKSYNP DQSMSEEEDM AANCLILLAQ GRTCLNVEGL  60
FNCKTCNRDF PSFQALGGHR TSHKRLKSMA VDDVVNTTTA TATMKISFTT FTNNASGDVI  120
GASVKSKVHE CSICGLEFSS GQALGGHMRR HRPLLAIPGQ VKKEKILEEE ESRFGLDLDL  180
NLPAPSDDDG KISFVNRPPL IFSSLGVNFH Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910785.14e-44zinc finger protein ZAT5
TrEMBLA0A0K9P8W91e-156A0A0K9P8W9_ZOSMR; Zinc finger protein
STRINGXP_008801217.16e-41(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-33C2H2 family protein