PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g00420.1
Common NameZOSMA_31G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 394aa    MW: 44028.1 Da    PI: 9.3477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.42.4e-1875166290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       Y +YA + GFsvrk ++++s  ++   k+t+vCske  ++    k      ++++  +  +trtgCka + +k    ++w+++ l+++HnH+l
  Zosma31g00420.1  75 LYYKYAGSKGFSVRKGSTRHS--KQGLRKKTYVCSKEAISKAVVPKiqnpleKSTKLGHIRNTRTGCKAPMSLKIV-GDQWMISILKENHNHDL 165
                      79******************9..3447************99988777778655555568899************99.9***************9 PP

             FAR1  90 a 90 
                      +
  Zosma31g00420.1 166 S 166
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1675166IPR004330FAR1 DNA binding domain
SuperFamilySSF577565.65E-5368389IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.9E-4372388IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.631374387IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDSGISEVNV TSAQDTTADL GDSNTILGEE VNHCLQSTFS FPDIDELGQD FESPSQTQEP  60
KIGMMFDSIK EAEELYYKYA GSKGFSVRKG STRHSKQGLR KKTYVCSKEA ISKAVVPKIQ  120
NPLEKSTKLG HIRNTRTGCK APMSLKIVGD QWMISILKEN HNHDLSTPRK NRTISSVGCR  180
TLSEAKVENE YSVIGMFTQI QSAKITCPSI SAPSMCTYGL FSSKGIPCRY IINYLISNGI  240
TTLLEALIMS RWKKTPKNST TCNEEILCPR PNELNQMFNR CAEIITNSED VNEPLIEELQ  300
RFLNEYETRN KITKISASRT SIKWFEDRIT TQPIVGNPKK AKTKGSGKNT GRPSKADPRF  360
KSTRELVVKS KRTCKNCHEP GHTARTCAKD YHS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PB290.0A0A0K9PB29_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-10FAR1-related sequence 12