PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g00580.1
Common NameZOSMA_31G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 171aa    MW: 19966.7 Da    PI: 9.8202
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.3e-3394152159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver aedp++v++tYeg+H h+
  Zosma31g00580.1  94 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHAHS 152
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3479152IPR003657WRKY domain
SuperFamilySSF1182902.48E-2986152IPR003657WRKY domain
PROSITE profilePS5081129.6289154IPR003657WRKY domain
SMARTSM007742.2E-3794153IPR003657WRKY domain
PfamPF031067.1E-2695151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDYFFQQDDS SSLPHPYGIS KPFKPICPPG ENDGDNLEHP VVSAEETSSN CKRRCPSSMK  60
MMKKKKKKAV AKKMKRKVRE PRFCFQTMSD VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC  120
TQENCRVKKR VERLAEDPRM VITTYEGRHA HSPGNDQDEP QTSSQLHFFW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2885151874Probable WRKY transcription factor 4
2lex_A7e-2885151874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15167KRRCPSSMKMMKKKKKK
26372KKKKKAVAKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851219.12e-58probable WRKY transcription factor 56 isoform X1
RefseqXP_022851220.12e-58probable WRKY transcription factor 13 isoform X2
SwissprotQ9SVB72e-52WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0K9P8T61e-125A0A0K9P8T6_ZOSMR; Putative WRKY transcription factor 12
STRINGevm.model.supercontig_72.182e-57(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-50WRKY DNA-binding protein 13