PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma31g00810.1

Common Name

ZOSMA_31G00810

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

ZF-HD

Protein Properties

Length: 131aa MW: 14298.2 Da PI: 8.8639

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma31g00810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	96.2	2.5e-30	60	116	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 kv Y+eC+kNhAas+G havDGC+Efm+s geegta al+CaAC CHR+FH+reve + Zosma31g00810.1 60 KVWYRECRKNHAASVGRHAVDGCREFMAS-GEEGTAGALNCAACSCHRSFHKREVERQ 116 789***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-21	56	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-28	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-25	63	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.624	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MPTSSSPSLH ISKSRAKVTP NHKTVELVVD QHHHLLMKIQ QDLSYKLIAG DINGSMLVNK 60 VWYRECRKNH AASVGRHAVD GCREFMASGE EGTAGALNCA ACSCHRSFHK REVERQVLGD 120 CSSNTASPRS *

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931461.2	4e-30	mini zinc finger protein 2
Refseq	XP_015069508.1	3e-30	mini zinc finger protein 2-like
Swissprot	Q9LJW5	7e-27	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A0K9P8V3	2e-92	A0A0K9P8V3_ZOSMR; Uncharacterized protein
STRING	Gorai.006G017300.1	3e-29	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-29	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Zosma31g00810.1

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]