PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g01410.1
Common NameZOSMA_31G01410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 275aa    MW: 30066.5 Da    PI: 8.2738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g01410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-19100150256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++ge
  Zosma31g01410.1 100 TYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALSIKGE 150
                      69****998.**********854...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31100158IPR001471AP2/ERF domain
PROSITE profilePS5103223.117100157IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21100158IPR016177DNA-binding domain
SMARTSM003807.7E-37100163IPR001471AP2/ERF domain
PfamPF008472.2E-12100150IPR001471AP2/ERF domain
PRINTSPR003671.0E-10101112IPR001471AP2/ERF domain
CDDcd000181.95E-31101159No hitNo description
PRINTSPR003671.0E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEENRLKIEA CSSPRSPCSS NTTASSSITN CITGQKEYGF VISSGNSPSS SYSSCSLWLE  60
QRSGVKEMAT ERGRRDGLVG NESKMKNKRN RDGGGGDHPT YRGVRMRNWG KWVSEIREPK  120
KKSRIWLGTF PTAEMAARAH DVAALSIKGE STYLNFPELA SELPRPATSS PKDIQAAAAK  180
AASATFSQNR RVVGVVRTDK ENLASNSNSI NRSPILEIPA SSSCEEDKAL FDLPDLFVDH  240
CKNVSCFYSF LLSSTTDDAA GEISFRQESP FLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1893158773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757522.15e-60ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ78e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9P9970.0A0A0K9P997_ZOSMR; Uncharacterized protein
STRINGcassava4.1_021971m3e-59(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]