PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma325g00010.1
Common NameZOSMA_325G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 396aa    MW: 44674.2 Da    PI: 7.7668
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma325g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.52.5e-14140232390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++A+++ Fsvr  ++++     + ++  +++++ Csk+g+++     t+ +rr++ ++r+gC a++k k+ + +++w+ + ++l+HnH+++
  Zosma325g00010.1 140 YYDFASSTRFSVRLGSTHNIldkqTGHKILVMKRLLCSKQGSPNLILPPTNGNRRKNGVSRCGCLASIKFKRIDrSDQWVTHFINLDHNHPFT 232
                       999**********9998876664244556789************9999999**********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-10140232IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKESSANMSY GTAKIPNSNN YQFNSPHCQT TVNLIDSSVN VCRSLDPDNV RCNFFDSENV  60
QSPSADIVDS SVQIPAHSDN VSCGTAKTHD NHLKRKFSST GGYPTSPNNE NGSSSYSQSN  120
KLFPIVGEVF PSYEMAVQSY YDFASSTRFS VRLGSTHNIL DKQTGHKILV MKRLLCSKQG  180
SPNLILPPTN GNRRKNGVSR CGCLASIKFK RIDRSDQWVT HFINLDHNHP FTTPTKIRYL  240
PINRSISHTS KILFSSLADV NVPISQQTAY FSNELGGPEN MSCMTLDINN MVRDDRIDLK  300
NYDVDLIVED FEMKKLENAQ FFYDLVKDDA GRLNLFWADP TMIENYKLFE DSVTFDTTYK  360
TNVYSMVFGM FCGVNHHRKT TIFGNAFLRY FLNSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562147e-97AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P8H10.0A0A0K9P8H1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-31FAR1-related sequence 5