PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma32g00070.1

Common Name

ZOSMA_32G00070

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 76aa MW: 8362.91 Da PI: 10.4895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma32g00070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33	2e-10	1	67	10	72
FAR1 10 vGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +GFsvr +++++ + +++ ++r++ Cskeg+ + + + +rr++a +r+gC a++k+k+e Zosma32g00070.1 1 MGFSVRLGSTNYKtskdDGKKNLIMRRLLCSKEGTVDLLHPPKLGKRRKNAISRCGCCASIKIKREG 67 7***987665545444556799********999998899*****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	1	67	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGFSVRLGST NYKTSKDDGK KNLIMRRLLC SKEGTVDLLH PPKLGKRRKN AISRCGCCAS 60 IKIKREGMSE LSMDC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	47	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P886	1e-46	A0A0K9P886_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Link Out ? help Back to Top
Phytozome	Zosma32g00070.1