PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma32g00680.1

Common Name

ZOSMA_32G00680

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 194aa MW: 21654.1 Da PI: 4.7395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma32g00680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C++ Fs+ L H++ H Zosma32g00680.1 27 YDCVFCKRGFSSAQALGGHMNIH 49 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.19E-6	25	54	No hit	No description
PROSITE profile	PS50157	10.824	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEEDVPKKDS SSDDQVNTIQ VRNVRSYDCV FCKRGFSSAQ ALGGHMNIHR RDRARIRDSN 60 TSSMQSSSTS PVVVVVAAGN VRPDNDEEMY IFGQSSTSKF NINSQGMIRP FFPLVSEDQP 120 SMIPPYHQPI PMHMITPAMV EEERRLELIR YGKELELGFK NRSVEGDDEE GGWEEKEING 180 GKDEGGVNLN LGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P8C4	1e-141	A0A0K9P8C4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	3e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma32g00680.1