PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma330g00130.1
Common NameZOSMA_330G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 241aa    MW: 29117.3 Da    PI: 10.073
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma330g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32301222103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Flk+++e++ed +++ ++sws   nsfvv+d ++f++ +Lp+yFkh+nf+SF+RQLn YgFkkv++e+         weF+++ F kg+k+ll
  Zosma330g00130.1  30 FLKNTFEMVEDLSTDVIVSWSFGRNSFVVWDLQKFSDILLPRYFKHKNFTSFTRQLNCYGFKKVRSER---------WEFANEFFLKGQKHLL 113
                       9********************999******************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikrk+++
  Zosma330g00130.1 114 KNIKRKNNS 122
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-4426119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-2927119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-3328119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-153053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2730119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-156880IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-158193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MERPKLEVCE IEAGESLNPK FDEDQLLTPF LKNTFEMVED LSTDVIVSWS FGRNSFVVWD  60
LQKFSDILLP RYFKHKNFTS FTRQLNCYGF KKVRSERWEF ANEFFLKGQK HLLKNIKRKN  120
NSYQHQTISK ERQWKRQIQQ HRKFVGIFME SELDAKFEQL MKDENTNMRE IYNLKQQIQF  180
MEKRIRERER KHQEMMGLIA RILQKTTYNH SNFNDGSYVL FSIANYNHSN LIARINFKNS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-21611914129Heat shock factor protein 1
5d5v_B5e-21611914129Heat shock factor protein 1
5d5v_D5e-21611914129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856610.19e-52heat shock factor protein HSF30 isoform X1
RefseqXP_021856611.19e-52heat shock factor protein HSF30 isoform X1
RefseqXP_021856613.18e-52heat shock factor protein HSF30 isoform X2
RefseqXP_021856614.18e-52heat shock factor protein HSF30 isoform X2
RefseqXP_021856615.17e-52heat shock factor protein HSF30 isoform X3
TrEMBLA0A0K9PAE11e-177A0A0K9PAE1_ZOSMR; Heat stress transcription factor A-7a
STRINGEOY299282e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-52heat shock transcription factor A2