PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma330g00200.1
Common NameZOSMA_330G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LSD
Protein Properties Length: 173aa    MW: 18210.9 Da    PI: 8.8224
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma330g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.34.5e-12731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C gCr +L Y  GA++VRCa+C+t+
  Zosma330g00200.1  7 CAGCRSTLLYSMGATNVRCAICNTI 31
                      ***********************97 PP
2zf-LSD1468.5e-155175125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+YP GA++VRC+ C+t+
  Zosma330g00200.1 51 CGGCRTLLMYPNGATNVRCTRCNTI 75
                      ***********************97 PP
3zf-LSD130.94.5e-1088111124
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                       Cg+C t+L+Y +GA +V+C +C+ 
  Zosma330g00200.1  88 CGNCNTTLMYSFGAANVKCVVCQY 111
                       **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.2E-13434IPR005735Zinc finger, LSD1-type
PfamPF069437.9E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.4E-154876IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-135175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-886114IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-988112IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSQIVCAGC RSTLLYSMGA TNVRCAICNT ITLVSQPPTQ STASDMAQLF CGGCRTLLMY  60
PNGATNVRCT RCNTINASRG NQVARMNCGN CNTTLMYSFG AANVKCVVCQ YITNVWGNNL  120
RPPVSVQSSL PSTSSAPPPT KTQTVVVENP KSLDGNGRMI SNVAVGVTSE KV*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022803.14e-64protein LSD1
RefseqXP_024022804.14e-64protein LSD1
RefseqXP_024022805.14e-64protein LSD1
SwissprotQ2QMB33e-49LOL2_ORYSJ; Protein LOL2
SwissprotQ6ASS24e-49LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0K9P8B81e-120A0A0K9P8B8_ZOSMR; Zinc finger protein LSD1
STRINGXP_007159613.12e-60(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.62e-48LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]