PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma336g00060.1

Common Name

ZOSMA_336G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 125aa MW: 14348.6 Da PI: 10.4707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma336g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	54	77	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C++C+ +F r+ nL+ H r H Zosma336g00060.1 54 FVCEICNkLRFQRNQNLQLHRRGH 77 89********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.0E-4	53	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MTMSNSDSWE PSAKVASLPP PAVAKKKRNL PGMPDLDTEV IALSPRTLMA TNRFVCEICN 60 KLRFQRNQNL QLHRRGHNLP WKLRQRTNKD VKECTCFLNQ VASRTTYFAI MAESCGRYRH 120 VDWN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020690375.1	4e-39	zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
Refseq	XP_020690376.1	4e-39	zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X2
Swissprot	Q9LVQ7	7e-37	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9P858	9e-89	A0A0K9P858_ZOSMR; Uncharacterized protein
STRING	XP_006393866.1	1e-35	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24616	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	3e-39	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma336g00060.1

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]