PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma33g00700.1

Common Name

ZOSMA_33G00700

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 297aa MW: 34525.7 Da PI: 8.7707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma33g00700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.5	1.8e-12	45	110	26	90
FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + ++++++ Csk+g+++ ++++rr++ +r+gC+ ++k k+ + +++w+ ++++l+HnH+l+ Zosma33g00700.1 45 KFFIMKRLLCSKQGSPSLILPPSNTTRRKNDISRCGCQTSIKFKRIDrSDQWVTDTINLDHNHPLT 110 567899*********99999999*****************99**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-9	45	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSYCRPGFLF VRNDRSILLR FRIRCGIFCS FRTDEECIGS GQWGKFFIMK RLLCSKQGSP 60 SLILPPSNTT RRKNDISRCG CQTSIKFKRI DRSDQWVTDT INLDHNHPLT TPSKVRYLLI 120 NRSLSQTSRL LFASLGEVNV PVSQQTAYFS HQLGGVQNMG CTTLDINNMV RDDRIDFKNY 180 DVDLIVEEFE LKKSENKDFF YNLVKDDEGR MKHLFLADST MIENDKLFGD SVTFDTTYKT 240 NVYSMMFDMF CGVNYHWKTT ISGSAFSRYF INTFIYTFSF LTFCKKLNCL PFRCLQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256211	0.0	AC256211.1 Zostera marina clone XTP08-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P7R3	0.0	A0A0K9P7R3_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma33g00700.1