PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma33g00800.1
Common NameZOSMA_33G00800
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 88aa    MW: 9815.05 Da    PI: 7.5059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma33g00800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.41.1e-085186239
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39
                     +Y +YA e GFsvrk ++++s  ++   k+t+vC keg
  Zosma33g00800.1 51 MYYKYAGEKGFSVRKGSTRHS--KQGLRKKTYVCLKEG 86
                     79******************9..3447**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-65186IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MDSGVSEVKG ASPQDMTPEI EEQGQDFEQP SHTEKPKIGM MFNSIVEAEY MYYKYAGEKG  60
FSVRKGSTRH SKQGLRKKTY VCLKEGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P7S52e-57A0A0K9P7S5_ZOSMR; Uncharacterized protein