PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma33g01320.1
Common NameZOSMA_33G01320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 405aa    MW: 45367.7 Da    PI: 6.7027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma33g01320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-094898146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+ E+  l+ ++ ++G+  W++I +          R+  ++k++w++
  Zosma33g01320.1 48 KQKWTPAEEAALKAGILKHGPSKWSAILKDSEfsnvlRLRSNVDLKDKWRN 98
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-124599IPR009057Homeodomain-like
SuperFamilySSF466893.59E-1345113IPR009057Homeodomain-like
SMARTSM007171.1E-547102IPR001005SANT/Myb domain
PROSITE profilePS500907.06248100IPR017877Myb-like domain
PfamPF002496.2E-74898IPR001005SANT/Myb domain
CDDcd116601.25E-154999No hitNo description
SuperFamilySSF467855.17E-14159233IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.8E-14159224IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.389161229IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.9E-14162229IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.8E-9164222IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEWTNHDPPW IECQNTPAFI PPYRFFDELN SFSKKAFPST YLSMGAPKQK WTPAEEAALK  60
AGILKHGPSK WSAILKDSEF SNVLRLRSNV DLKDKWRNMS VTANGWGSRD RARLAMKRNQ  120
ALKKDENQNA IVVGENQSVV LNPTPIAISS QMAPTNDPKK PIGSFDDVIL EAITSLKEPT  180
GSNKTSISML IEVKYNLPTN FKQTFTIKLA ELVESGKLVK VKRKYRLPSD SGSVSKRVTT  240
VEKKMISECP EEKKDAPLPM VIDSERESPE CLAIVEMETS ENLAVEEMKE TPQQLMIEEK  300
KDTPAVFENK PLKRNFTKTQ IDFDLRNMFN MTEEEAASAA AHAVAEAELA LAEAEAAAAE  360
AEEAEAYAEE LHIVLAEEKR RHKNRLKKLK ISSNERSRNS GWGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923662.16e-68single myb histone 5 isoform X1
RefseqXP_010923664.15e-68single myb histone 6 isoform X3
TrEMBLA0A0K9P8120.0A0A0K9P812_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-63telomere repeat binding factor 1