PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma346g00020.1
Common NameZOSMA_346G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 182aa    MW: 21017 Da    PI: 4.8368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma346g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10921572983
                       -..--SEEEEEETTS...........-EEEEEE..EEETTEEEE-.....TTHHHHHHHHT--TT-EEEEE CS
                B3  29 kkeesktltledesg...........rsWevkliyrkksgryvlt.....kGWkeFvkangLkegDfvvFk 83 
                       +++++ ++++ d++g            +W+ +l     s+++vl+     +GW++Fvk+ +L++gD +vFk
  Zosma346g00020.1  92 ENTGEEDVVVSDQQGehaaedefhqdMEWTARL-----SKSHVLGgnpymTGWRHFVKELELEVGDLCVFK 157
                       445667899999999999998888888888888.....3445555555556*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-7116158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-7117158IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MYGKGWCLFV EKNCLMKDMV FEFLYYPSIR RSLIVQITRY CVPASFIEGT VRKPIKVPAF  60
FSRPRPTTLR EKTEFKVESV NEESSDNEPD NENTGEEDVV VSDQQGEHAA EDEFHQDMEW  120
TARLSKSHVL GGNPYMTGWR HFVKELELEV GDLCVFKILF KFVPDNIPVI KMAWINLGLN  180
E*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P7731e-133A0A0K9P773_ZOSMR; Uncharacterized protein