PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma34g00070.1

Common Name

ZOSMA_34G00070

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 172aa MW: 19503.5 Da PI: 5.5113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma34g00070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	105	136	3	37
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK 37 ++hn +Er RR +iN+++ L +l+P + ++ K Zosma34g00070.1 105 EMHNFNERVRRGNINNKIKALHDLIPRS---HNHK 136 68************************97...4544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-7	96	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-6	105	139	No hit	No description
Pfam	PF00010	4.2E-6	105	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	105	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDFSGEEHRC NNYQIQSDEW KDLDAWIQDD GTGGFIVDEG ENSRNFLSEV VLSEMEKWVW 60 PGFQVTDVIS TPTSVKEVEH TSTNYVTDDK KKSVSSSSYR TATHEMHNFN ERVRRGNINN 120 KIKALHDLIP RSHNHKNVSA AAAAHTINPN LINSMPGIDQ QQQPVIYYPP M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P6S8	1e-126	A0A0K9P6S8_ZOSMR; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Zosma34g00070.1