PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma34g00120.1

Common Name

ZOSMA_34G00120

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

GATA

Protein Properties

Length: 325aa MW: 36574.3 Da PI: 7.2152

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma34g00120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	232	265	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C kTp+WR gp g+ktLCnaCG++y++ + Zosma34g00120.1 232 CLHCDIQKTPQWRAGPMGPKTLCNACGVRYKSGR 265 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.5E-67	9	313	IPR016679	Transcription factor, GATA, plant
SuperFamily	SSF57716	1.85E-14	225	287	No hit	No description
PROSITE profile	PS50114	10.936	226	262	IPR000679	Zinc finger, GATA-type
SMART	SM00401	5.1E-16	226	276	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.5E-14	230	263	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.60E-13	231	288	No hit	No description
Pfam	PF00320	2.0E-14	232	265	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	232	257	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MVGGRFVVDN YDDQSIVFEE DVFDKIEDLL DFDKLEDMQL INNHHHHHHH QHPEQQQQQQ 60 NQNQPINCFQ EQHPWPPKSD FLSSFKCDID VAELEWLSNF VEDSFSPTAE DVMLLPKVIH 120 TDNGSAVTSF SYSSSSPTSS SSCSTAAIDK KAEETTVVRG RAPRSKRPRP HVPVPVPVPM 180 PVVVVAPNPV LPDNEFKDEK RKKLKTSLSV SATNRNYGID EREAEKQVVR KCLHCDIQKT 240 PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP DRHSNSHKMV VEMRVKSSHT 300 KTTTPAIPSL PVSAKGCELL NYIK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P6T3	0.0	A0A0K9P6T3_ZOSMR; GATA transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5169	34	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	2e-38	GATA family protein

Link Out ? help Back to Top
Phytozome	Zosma34g00120.1