PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00290.1
Common NameZOSMA_34G00290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 323aa    MW: 36354.5 Da    PI: 5.7035
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-1943104257
                      T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+ +t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  Zosma34g00290.1  43 STRWIPTTDQIRILKDLYYNsgLRSPNADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 104
                      58*****************8789*************************************97 PP
2Wus_type_Homeobox112.52.3e-3642106265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW Pt++Qi+iL++ly+ sGlr+Pn+++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
    Zosma34g00290.1  42 SSTRWIPTTDQIRILKDLYYnSGLRSPNADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 106
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1136109IPR009057Homeodomain-like
PROSITE profilePS500719.86339105IPR001356Homeobox domain
SMARTSM003892.0E-441109IPR001356Homeobox domain
CDDcd000861.01E-444106No hitNo description
PfamPF000463.5E-1644104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-645104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEHHHQQQFH GGQPQLMSEN EEMNNNGSGG GSSKSSFLCR QSSTRWIPTT DQIRILKDLY  60
YNSGLRSPNA DQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRLTV DIAAAATTNK  120
FSNNTNMSSS SSPSGISPAS HAVYAGLGQM GSNGGGSVVM ERTSYMECSL PGGMPMPVPE  180
PNVGVGVGWV SVETGATTMQ QFYYHQQRPT TPFPAPHHHH HYYDDGYYSN NNKLQAHHLH  240
IREENQHPED DDEEEEEEEE DEEIETLPLF PIHSQETQSY FLDQQHAIHN QESNNMETSL  300
ELTLNSYYAA SSSSTPHGSE HD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9350.0A0A0K9P935_ZOSMR; WUSCHEL-related homeobox
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-38WOX family protein