PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma355g00020.1
Common NameZOSMA_355G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 119aa    MW: 12669.5 Da    PI: 8.8527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma355g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA66.23.5e-215791135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ CgttkTplWR+gpdg+k+LCnaCG++yrk+ +
  Zosma355g00020.1 57 CTMCGTTKTPLWRSGPDGPKSLCNACGIRYRKEQR 91
                      ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.1E-1751102IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-155194No hitNo description
CDDcd002023.27E-125688No hitNo description
Gene3DG3DSA:3.30.50.101.6E-175691IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.7035787IPR000679Zinc finger, GATA-type
PfamPF003207.1E-195791IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEEDFLGRLS GVDCSLRLGL PGGAATTTTT TTGSATYKYC TQQPSSSQPQ PMSPEFCTMC  60
GTTKTPLWRS GPDGPKSLCN ACGIRYRKEQ RRLALSLGIP STTITPTTMI PPPTTIHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229580.14e-16GATA transcription factor 19
TrEMBLA0A0K9P6M44e-79A0A0K9P6M4_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-16GATA transcription factor 15