PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma35g00300.1
Common NameZOSMA_35G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YA
Protein Properties Length: 329aa    MW: 35938.8 Da    PI: 7.4354
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma35g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.1e-33160216158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRhkhA+rR+Rg+gGrF
  Zosma35g00300.1 160 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKDRKPYLHESRHKHAMRRARGCGGRF 216
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.8E-38158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.314159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-28161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVDPNANMPP STVASQAQWC GVGYTSDQGA HMKNMLEDTL KQPQVSAMNG RNGTRVKSPK  60
NSADGLPDTA IEEGSNDDTS YPEQENSHIE PVFPAHPLMP EYFIPHTQLE LGQTITCAPY  120
PYSDPYYGNM IAGYGPQPLV HSPFIGTSQT RMVLPLEMTE EPVYVNAKQY HGILRRRQSR  180
AKAELEKKLI KDRKPYLHES RHKHAMRRAR GCGGRFLNTK KGGDANGSNP LPKRPGGSNV  240
GNPMHPTSFS GSDNTPDDDA MGTSDPNIKN SQECSSEHSN NQSHTHANNH NGGSFQQHTS  300
FPFNIGDCSG PQKQNGILAK SCQTVTIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20160230272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200209RHKHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P8V10.0A0A0K9P8V1_ZOSMR; Nuclear transcription factor Y subunit
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-49nuclear factor Y, subunit A1