PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma36g00250.1
Common NameZOSMA_36G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 232aa    MW: 26724 Da    PI: 9.1457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma36g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171459248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ eEd++l+ +v+ +G++ Wk I   ++ gRt k+c++rw ++l
  Zosma36g00250.1 14 GAWSREEDKKLKALVEVYGPRKWKNICTGIP-GRTSKSCRLRWINHL 59
                     89*****************************.************996 PP
2Myb_DNA-binding59.76.4e-1965109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + r+T+eEd ++++a++ +G++ W++Ia+ ++ gR+++ +k++w++ 
  Zosma36g00250.1  65 KSRFTEEEDAKIIQAHAIHGNR-WSLIAKLLP-GRSDNAIKNHWNST 109
                      689*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.917859IPR017930Myb domain
SMARTSM007175.5E-151261IPR001005SANT/Myb domain
SuperFamilySSF466891.14E-2913106IPR009057Homeodomain-like
PfamPF002491.1E-151459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241466IPR009057Homeodomain-like
CDDcd001676.10E-141559No hitNo description
PROSITE profilePS5129426.38860114IPR017930Myb domain
SMARTSM007174.1E-1764112IPR001005SANT/Myb domain
PfamPF002497.1E-1765109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2567114IPR009057Homeodomain-like
CDDcd001673.46E-1367110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
METNGVEEDV SISGAWSREE DKKLKALVEV YGPRKWKNIC TGIPGRTSKS CRLRWINHLS  60
PSVHKSRFTE EEDAKIIQAH AIHGNRWSLI AKLLPGRSDN AIKNHWNSTL TRRLKIRRPS  120
DLTQEAFRER EDYDFMWRGG KKLCQRTVDK AAGEDDPITA LTLSINNPRQ SHVNRDHEND  180
DHDDDEKLGF DPSSPQSLDI KGFMPVIRDM IAKEVRLYHH NSYFNSHART K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-37121143105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-361211457159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-361211457159MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-37121143105C-Myb DNA-Binding Domain
1msf_C7e-37121143105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5W51e-172A0A0K9P5W5_ZOSMR; Myb domain protein 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.12e-40myb domain protein 1