PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma376g00140.1
Common NameZOSMA_376G00140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 209aa    MW: 24082.2 Da    PI: 6.912
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma376g00140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-19666257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++t+eql +Le ++++  r+p+a+++++++  l    +++ ++V++WFqN++a++k+
  Zosma376g00140.1  6 STRWCPTPEQLMILEGMYRSgIRTPNASQIQHITVYLscygKIEGKNVFYWFQNHKARDKQ 66
                      58*****************99**************************************97 PP
2Wus_type_Homeobox1153.6e-37567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLe +y+sG+rtPn+++iq+it  L+ yGkie+kNVfyWFQN+kaR++qk
   Zosma376g00140.1  5 PSTRWCPTPEQLMILEGMYRSGIRTPNASQIQHITVYLSCYGKIEGKNVFYWFQNHKARDKQK 67
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.297267IPR001356Homeobox domain
SMARTSM003892.9E-4471IPR001356Homeobox domain
CDDcd000860.00379568No hitNo description
PfamPF000461.7E-16666IPR001356Homeobox domain
SuperFamilySSF466892.85E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-7867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPQMPSTRWC PTPEQLMILE GMYRSGIRTP NASQIQHITV YLSCYGKIEG KNVFYWFQNH  60
KARDKQKMRR LICRQQEKQR QIFQMEISNS PLQLLHSNQL PANYNLQQAS AVDSSYNTNE  120
IKLDMDIEGC KLEVFGREAN QHRLEEEEEE TEESSMTSTN TSKISGNEWI AMVKMGSNVE  180
SPSACFRSRS QPKTLDLFPT YSTGLRDI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783634.12e-51WUSCHEL-related homeobox 3B-like
TrEMBLA0A0K9P5K41e-155A0A0K9P5K4_ZOSMR; WUSCHEL-related homeobox 3B
STRINGXP_008783634.17e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-36WOX family protein