PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00200.1
Common NameZOSMA_37G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 255aa    MW: 27576.1 Da    PI: 4.8396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-173685255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+Wv+eIr+p   + r +r +lg+f t  eAa+a+++a+++l+g
  Zosma37g00200.1 36 TYRGVRQRT-WGKWVSEIREP---N-RgARLWLGTFNTSLEAAQAYDHAARSLYG 85
                     69****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-253591No hitNo description
PROSITE profilePS5103220.4153693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-283693IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-193693IPR016177DNA-binding domain
PfamPF008471.2E-113685IPR001471AP2/ERF domain
SMARTSM003802.9E-283699IPR001471AP2/ERF domain
PRINTSPR003671.3E-93748IPR001471AP2/ERF domain
PRINTSPR003671.3E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MESSGGLTEK QKKCPLRRSR KGCMKGKGGP DNSQCTYRGV RQRTWGKWVS EIREPNRGAR  60
LWLGTFNTSL EAAQAYDHAA RSLYGDCARL NLSSAGSCST QLDSDHPDVS RPTKLLKVAD  120
QGNEINDNSS TNTTTCSTNT TTCSSSSSSS PVQSNSSSSL GLLTSKATAT GFDSTAVATS  180
YLGVDDDDDN VFSLLEGSEG RSLWENYINE DYLHWEGMRL NSDISPTKFS WEGDGEELMG  240
FDALQLSWSS TSPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-153792359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5390.0A0A0K9P539_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-40ERF family protein