PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma37g00820.1

Common Name

ZOSMA_37G00820

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YC

Protein Properties

Length: 186aa MW: 21162.7 Da PI: 5.5244

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma37g00820.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	131.2	3.3e-41	68	167	5	101
NF-YC 5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 f+++q + k+++fk h+lPla+ikki+k+d+dv+mi+aeaPv++++ace+fil+lt +s+ +ee+kr+tl+k+dia a+++ difdflvd+ Zosma37g00820.1 68 FFADQthdMLKMANFKTHNLPLAKIKKIMKSDDDVHMIAAEAPVVFARACEMFILQLTRQSYGYTEESKRKTLQKTDIAMAISNNDIFDFLVDV 161 5555555588999******************************************************************************* PP NF-YC 96 vprdel 101 p++++ Zosma37g00820.1 162 LPTEDV 167 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.54E-28	37	158	IPR009072	Histone-fold
Pfam	PF00808	6.4E-21	86	149	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.9E-33	87	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDQKNDNDYS KNNNSEHNNQ NYSTSLPSPL PPVKLSDKDP YSTVVMQQQQ QQQVNNVIHY 60 HLCQQDVFFA DQTHDMLKMA NFKTHNLPLA KIKKIMKSDD DVHMIAAEAP VVFARACEMF 120 ILQLTRQSYG YTEESKRKTL QKTDIAMAIS NNDIFDFLVD VLPTEDVKEE HSGVGLGSNS 180 FYTVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-41	72	163	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020242618.1	8e-46	nuclear transcription factor Y subunit C-6-like, partial
Refseq	XP_022717601.1	2e-45	nuclear transcription factor Y subunit C-2-like
Refseq	XP_022717602.1	2e-45	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9ZVL3	1e-44	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A0K9P7J7	1e-135	A0A0K9P7J7_ZOSMR; Nuclear transcription factor Y subunit C-2
STRING	XP_008346078.1	1e-44	(Malus domestica)
STRING	XP_008356118.1	1e-44	(Malus domestica)
STRING	XP_008372003.1	1e-44	(Malus domestica)
STRING	XP_002512355.1	1e-44	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7345	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-46	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Zosma37g00820.1

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]