PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g01300.1
Common NameZOSMA_37G01300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 251aa    MW: 27206.9 Da    PI: 8.873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g01300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+ksF++   L  H  +H
  Zosma37g01300.1 100 YQCTTCDKSFPSFQALGGHRTSH 122
                      9***********99998888777 PP
2zf-C2H214.40.00011169191123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Zosma37g01300.1 169 HRCSICGSEFSSGQALGGHMRRH 191
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.59E-1099122No hitNo description
PfamPF139121.3E-1299124IPR007087Zinc finger, C2H2
SMARTSM003550.019100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.59E-10164191No hitNo description
PfamPF139121.5E-11168193IPR007087Zinc finger, C2H2
SMARTSM003550.012169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGMEAVYDGS VDDYSSHSIM KGKRTKRRRN FNRSPMSTTT TTTTVSTTSS GSDISGSRNS  60
TDDTITKKEE EDEEMANCLI LLAQGRGLIT GDTDIGRCVY QCTTCDKSFP SFQALGGHRT  120
SHKKPKTSTS TAVMMIKGKN KSTQEESSLI KINNILLSPF VGGTKSKVHR CSICGSEFSS  180
GQALGGHMRR HRSTMVLEEK KEKKLVFGLD LNLPAPSEID MTVDPSSPSI GYHCILPILA  240
ELPLLSKLSS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779116.16e-48zinc finger protein ZAT5-like
TrEMBLA0A0K9P7U60.0A0A0K9P7U6_ZOSMR; Zinc finger family protein
STRINGXP_008779116.12e-47(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-27C2H2 family protein