PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g01320.1
Common NameZOSMA_37G01320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 246aa    MW: 27729.6 Da    PI: 6.5891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g01320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-055981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F+++  L  H++ H
  Zosma37g01320.1 59 FPCTYCLRKFTTPQALGGHQNAH 81
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.56E-65586No hitNo description
Gene3DG3DSA:3.30.160.602.6E-45585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-65884IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0535986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MASEMETAKM MTKEEEEEEE KEKSSGHSEM ERSHDDDDVK NEENISISSD RKEGEERVFP  60
CTYCLRKFTT PQALGGHQNA HRKEKTSALK TREPEFFTPS PYNHYHFNHQ RSPSQHVYNY  120
SSPTSATRGI LTSNSHDKIY YSNLPYDYSR FYTTTPPTIL KNDAASAAAA AAFPSSSMAG  180
VSLWHGKMKG EDERRSLQLL QPLMLPNGRW WTGGRNGKGK DGALVHLNQQ PDPKDGDAID  240
LTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P7N40.0A0A0K9P7N4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-13C2H2 family protein