PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma381g00200.1
Common NameZOSMA_381G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HRT-like
Protein Properties Length: 366aa    MW: 41637.7 Da    PI: 10.659
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma381g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like41.42.4e-13286316130
          HRT-like   1 iCGviledG.svCkrqPvkgRKRCeeHKGmR 30 
                       +CG+  edG s+C ++Pv+gRKRC++HKGm+
  Zosma381g00200.1 286 MCGMVKEDGfSICVKKPVQGRKRCQQHKGMK 316
                       6********789******************7 PP
2HRT-like50.63.3e-16332362131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       +CGv+ledG +C++ P kgRKRC  HKG+Ri
  Zosma381g00200.1 332 VCGVNLEDGKTCMAMPTKGRKRCDFHKGKRI 362
                       7*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKKKPSSSS TTCQSRRLKR EECHRTKHDS VFSKWKILIG ALDWDNHRFG KDGSERYRLH  60
NLPLSSSCPG IYELGIGTSH ENARSSHLVR SRKVIIVYLG QAENVRTRLQ HYGRAGSHLD  120
NGNNYQSTSN CEFSSSSSSL SSSLVKNKKD PGFFKDVFNR GFSLVFRWAP MASKKQAEDV  180
EFLMLGVFDY AWNKISNSFC RRDDILKKLD AISSRNPFTV LMTELKLLKQ HVFDRKKHGI  240
RIDARRKMVS SSYFDPQIIK FQKTRPRLIV ERDEADYSDS ASSVAMCGMV KEDGFSICVK  300
KPVQGRKRCQ QHKGMKGKVN RSGKSRNNTT VVCGVNLEDG KTCMAMPTKG RKRCDFHKGK  360
RISKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5450.0A0A0K9P545_ZOSMR; Transcripteion factor
STRINGGSMUA_Achr8P21880_0011e-104(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-76effector of transcription2