PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma38g00200.1
Common NameZOSMA_38G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 252aa    MW: 27292.1 Da    PI: 11.3219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma38g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.54.8e-31182235255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+av+ LGG+++AtPk +lelm++k+Ltl+hvkSHLQ+YR+
  Zosma38g00200.1 182 PRIRWTTSLHARFVHAVDLLGGQNRATPKLVLELMDIKDLTLSHVKSHLQMYRT 235
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.53E-15179235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-27180235IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22182235IPR006447Myb domain, plants
PfamPF002495.0E-6185234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLSSPDLSLR ICPPDTATND GGMNSPAATH TRGTQILAKS KMRSFMEGVP VYHNNRQTIP  60
FPSIIPNKMG TSYYRRHISP YCSTSSSSTS SSTSSSSPPS NLLSSSSLLH SSSAGFRSPF  120
HRHRMVPLTV TPTRLKDVLY LNSQINGTGT GTCASSSRSR FTTNSKLQTS SMMKKVTSMR  180
APRIRWTTSL HARFVHAVDL LGGQNRATPK LVLELMDIKD LTLSHVKSHL QMYRTVKAAD  240
KLAASSSAGN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-15183237357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-15183237357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-15183237357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-15183237357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-15183237458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849441.12e-35transcription repressor KAN1
TrEMBLA0A0K9P4I10.0A0A0K9P4I1_ZOSMR; Uncharacterized protein
STRINGERN110228e-35(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-32G2-like family protein