PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma38g00290.1

Common Name

ZOSMA_38G00290

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 282aa MW: 31257.8 Da PI: 10.7568

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma38g00290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	89	112	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp+C F ++s+L +H r H Zosma38g00290.1 89 HQCPICRWKFVDHSELDSHFRDiH 112 79*****************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0036	89	112	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	89	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MLNRLLGLKS KILPTISSSS SRPSVVGVGV ALFWDLNYGK PPPHLPIQTT FQYLRIAASR 60 FGTVRLAIAF TSSSHDTRRR SSSTSPTTHQ CPICRWKFVD HSELDSHFRD IHEREQSKRL 120 IDVTSAKGFR KIHLSSKIEN FKKAARHVAF TGSGSSDPTE ELRRAGVRVR KGDLGAMREE 180 ILDALGRSGL QCAVLVSDDL GLTDVLKEAK TRGVKTVVVG GDGGVSEKKV ELRRCADAAF 240 TWKEVIKGKA MEAAPKIVQR WKDKDLLQRL EWKHNSSDTR A*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P6R1	0.0	A0A0K9P6R1_ZOSMR; C2H2 type zinc finger protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12234	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	5e-38	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma38g00290.1