PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma38g00570.1
Common NameZOSMA_38G00570
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 632aa    MW: 69022.7 Da    PI: 5.8684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma38g00570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.5e-1256100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W+++E+e++++  +++  + Wk+I + +g  +t  q++s+ qky
  Zosma38g00570.1  56 RESWSEQEHEKFIESLQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.26E-1550106IPR009057Homeodomain-like
PROSITE profilePS5129414.03951105IPR017930Myb domain
TIGRFAMsTIGR015577.1E-1654103IPR006447Myb domain, plants
SMARTSM007175.2E-1055103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-55596IPR009057Homeodomain-like
PfamPF002491.8E-956100IPR001005SANT/Myb domain
CDDcd001672.73E-758101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLPVTTVGKD DGSGSFIAPA PVSGIGLSQN TEFVSDDATT TTTKKVRKPY TIKKTRESWS  60
EQEHEKFIES LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKIQKDGTN DHIPPPRPKR  120
KAAHPYPQKA SKNDTKSSQF SNPLQAPSYS VVSEQGYSFK RAVVDSSSIQ GTPNAITIAP  180
CWSQNTTTPI SIDNAPSWSQ NTTIPTISID DLPSWSQNTT IPTISIDDLP CWSHNTTTPI  240
SIDDLPCWSQ NTTKPISIDD FPGWSQNTTA PISIDDLPIS IDDFPGWSQN TTAPISIDDL  300
PISIDDLPIS IDDFPCWSQN TTTPISIDDL PCWSQNTTTP ISTNNISSGK DFTNDWRHVG  360
SSKNAPNKNF CSSSGKDNQG HVGSSKNAPN KNFCSSSGKD DWGHVGSSKN APNKNFYSSS  420
GKDDWGHVGS SKNAPNKNFC SSSGKDDWGH VGSSKNAPNK NFYSSSGKDD WGHVGSSKNA  480
PNKNFCSSSG KGLTDDWGYV GSSKNAPNKN CCSSSGKDDW GHVGSSKNAP NKNGCSSSGS  540
PSETWPISET SEQIRNIPAN RAIPDFVQVH QFIGSVLDPD TEDNHMETLK QMESIDVETV  600
LLLMKNLTVN LENPDFEEHR KLLSYYSDQM Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P4L60.0A0A0K9P4L6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.29e-38MYB_related family protein