PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma390g00060.1
Common NameZOSMA_390G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 325aa    MW: 36923 Da    PI: 6.5602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma390g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19117215297
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       +k+l +sdv+++gr+vlpkk ae +  g+  +e++++ + d s  ++W++k+++  +++s++yvl+ ++ eFvk +gL++gDf++ ++d+  +
  Zosma390g00060.1 117 QKELRNSDVGSLGRMVLPKKEAELYlpGLTAREGIMINMDDMSTlQEWTFKYRFwpNNRSRMYVLE-NTGEFVKIHGLQVGDFIMVYRDD-CR 207
                       7999******************999**9999**********6666*******99888888889999.*******************9654.66 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                        ++ ++++
  Zosma390g00060.1 208 DRYIIRAR 215
                       66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-26114226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20115216IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-15116218IPR003340B3 DNA binding domain
PROSITE profilePS508639.206116218IPR003340B3 DNA binding domain
PfamPF023624.3E-15117216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEGGELCRYN NGSSKFYFPE DPRDVEGRMR IRRRKRRMRM MGNGGFSKTV VGFPGGGRGK  60
RSVRQRRLFV QPFKCFVSAI PPAPLVSSGV PPLPPPPIRR GFPFPGKTWS GVRFVLQKEL  120
RNSDVGSLGR MVLPKKEAEL YLPGLTAREG IMINMDDMST LQEWTFKYRF WPNNRSRMYV  180
LENTGEFVKI HGLQVGDFIM VYRDDCRDRY IIRARKAKST KEVEVAEEEE EEEVAPLPQV  240
DDLFVAQVTQ TTTDLSGTNY TDLYLPLSDE MSSISFNMTD ADSTAFSTDF AFCFDNDIMG  300
NNHPRVLESV PSLDSIDNLS LDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-481122271116B3 domain-containing transcription factor FUS3
6j9b_D7e-481122271116B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591748.16e-64B3 domain-containing protein LFL1-like
TrEMBLA0A0K9P6M30.0A0A0K9P6M3_ZOSMR; Uncharacterized protein
STRINGXP_008775431.12e-57(Phoenix dactylifera)
STRINGGSMUA_Achr3P32440_0014e-58(Musa acuminata)
STRINGGSMUA_Achr8P18070_0015e-58(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-39B3 family protein