PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma391g00020.1
Common NameZOSMA_391G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 290aa    MW: 32901.2 Da    PI: 10.278
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma391g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-1680130148
                       TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT++Ed +l+ +vk++  g    +W++Ia+++g +R + qc++rw+++l
  Zosma391g00020.1  80 KGSWTPDEDRRLIMLVKKYDDGtrniSWTKIAKMIG-NRIGRQCRERWHNHL 130
                       799*****************99**************.*************97 PP
2Myb_DNA-binding36.11.4e-11136177147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ W++eE++l+v  ++++G++ W++    ++ gR+++++k++w++ 
  Zosma391g00020.1 136 KDDWSKEEELLFVVSHRKFGSR-WSK---LIP-GRSENSIKNHWNST 177
                       578*******************.**9...***.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.78375134IPR017930Myb domain
SMARTSM007173.6E-1679132IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2380179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2181136IPR009057Homeodomain-like
CDDcd001671.36E-1382130No hitNo description
PfamPF139211.1E-1783144No hitNo description
PROSITE profilePS5129411.621135182IPR017930Myb domain
SMARTSM007171.9E-6135180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-13137179IPR009057Homeodomain-like
CDDcd001671.80E-8139178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPKSAPTTEN GTQERVTLSL LPIPTSPHTT FSNSHLLRQV PFLPSRTSDD HIPRPTSPFF  60
FSPLRGRMDG APSTGGQISK GSWTPDEDRR LIMLVKKYDD GTRNISWTKI AKMIGNRIGR  120
QCRERWHNHL RPDIKKDDWS KEEELLFVVS HRKFGSRWSK LIPGRSENSI KNHWNSTKRH  180
LIAKLNKPGR LFSNRNGHSV LHDYILSIID PSHNPPPPSS LSPPPEEEEM QASVDSNEYN  240
GGSPVLVPPV SSYDFQDKLV QYRCPNCFFT LLPQKLTGET ATTTRRFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32781775103B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P4A40.0A0A0K9P4A4_ZOSMR; Uncharacterized protein
STRINGXP_006425043.13e-39(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.18e-41myb domain protein 118