PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma393g00020.1
Common NameZOSMA_393G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 315aa    MW: 35911.9 Da    PI: 9.345
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma393g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.22e-1185173387
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                       Y +YA+++GFsvr  +++++    + ++  ++r++ Cske + +  +  +  +rr++a +r++C a++k+k++  +++w v+++     H
  Zosma393g00020.1  85 YYDYASKMGFSVRLGSTNYKtskdDGKKYLVMRRLLCSKERTVDLLHPLKLGKRRKNAISRCSC-ASIKIKRKGmSEVWIVNTIIPSSHH 173
                       999**********9876655453333445789**********9999888899************.89*****999******998754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-885173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPNANYVPHH NHDTPLDNLR TPISSENNDL TGQPNAITSS VNASPSFFVP KKSTDTNSSS  60
DNVKLNSPPT FGQFYSSYSV ALDQYYDYAS KMGFSVRLGS TNYKTSKDDG KKYLVMRRLL  120
CSKERTVDLL HPLKLGKRRK NAISRCSCAS IKIKRKGMSE VWIVNTIIPS SHHQKLLFQS  180
LSEVNVPSSQ QTAYFSTQVG GIEHMRCTQL DISNMCRDDR IDLKNYDVDL LVEEFEMKKF  240
VQLDFFYSIV KDSSGRLKYV FWVDSIMIQH FKLFGDAITF DTTYKTNVYS LIFGMFCEVN  300
HHRKTVIFGS AFLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P6M10.0A0A0K9P6M1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-24FAR1-related sequence 5