PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3972g00010.1
Common NameZOSMA_3972G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 131aa    MW: 15416 Da    PI: 10.7589
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3972g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.61.2e-161151343
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       i+n+  r  tf kRr+g++KK +ELS+LCd++++ ++fs+ 
  Zosma3972g00010.1 11 IQNDAARRATFEKRRKGLIKKVSELSTLCDVKACALVFSPY 51
                       89*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.941149IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-24160IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-12323IPR002100Transcription factor, MADS-box
CDDcd002662.22E-27386No hitNo description
SuperFamilySSF554555.89E-25395IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVRKKVKLVW IQNDAARRAT FEKRRKGLIK KVSELSTLCD VKACALVFSP YDTAPEIWPQ  60
DNQDVMRVLG RFRNMPEMEQ SKKMLNQEGF LRNRIGKLHE QLHKLNSENR ETKLHKVTDE  120
PVHGWRKAYR *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376202.18e-48PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-36AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0K9P4B12e-92A0A0K9P4B1_ZOSMR; Uncharacterized protein
STRINGXP_009376202.13e-47(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-38AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]