PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma3g00870.1

Common Name

ZOSMA_3G00870

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB

Protein Properties

Length: 198aa MW: 22452.2 Da PI: 9.7683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma3g00870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Zosma3g00870.1 14 RGSWTKEEDRRLISYIRAHGEGCWRSLPKASGLQRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.8e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE +v+++ + G++ W+ Iar ++ gRt++++k++w+++ Zosma3g00870.1 67 RGNFTPEEVTTIVKLHSLIGNK-WSFIARNLP-GRTDNEIKNHWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.39	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.29E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.549	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.87E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGPSPCCENE HINRGSWTKE EDRRLISYIR AHGEGCWRSL PKASGLQRCG KSCRLRWINY 60 LRPDLKRGNF TPEEVTTIVK LHSLIGNKWS FIARNLPGRT DNEIKNHWNT HIKRKLLPTK 120 QTTVIDHRKI NSTTTTTTTS NGSSSSSDYG EDQSRHGRDL ELDLDLELSI SLPFYSTNSK 180 TTFPVPNLHE RGSTVGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-28	9	116	22	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022985891.1	5e-74	myb-related protein 308-like
Swissprot	O49608	1e-71	MYB32_ARATH; Transcription factor MYB32
TrEMBL	A0A0K9P3M1	1e-143	A0A0K9P3M1_ZOSMR; Transcription factor MYB32
STRING	XP_008799190.1	8e-73	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	4e-70	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Zosma3g00870.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Lotkowska ME, et al. The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Physiol., 2015. 169(3): p. 1862-80 [PMID:26378103] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]