PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma3g01250.1

Common Name

ZOSMA_3G01250

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB_related

Protein Properties

Length: 1233aa MW: 137335 Da PI: 6.7502

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma3g01250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	927	969	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E +vda++++G++ + I++++ +R+ +qck ++ k Zosma3g01250.1 927 DWTDTEKSMFVDAFRLFGMD-FIQISHYLE-TRSKEQCKIFFSKT 969 6*****************.*****.******888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-12	711	768	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.067	718	769	IPR017884	SANT domain
SMART	SM00717	2.0E-6	719	767	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	13.404	923	974	IPR017884	SANT domain
SMART	SM00717	4.0E-4	924	972	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-5	927	967	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.38E-9	927	974	IPR009057	Homeodomain-like
CDD	cd00167	1.70E-4	928	966	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1233 aa Download sequence Send to blast
MPAEPNPFNR RDFVYRGERR PHERDLTDGF VGVGGGSLSS SPTPWQLDPN HSPSPRRHFS 60 GYYKQVFADE PGINGHNINR SKVEGCRNSY GRYSRPANLR ETHDYSRRSS WNYDDLPRRQ 120 HDPVTTNAQR QVVIPYASPT SPSSSSSYQP QVQLSSLKHQ RQKNDQIVLG DSFNNRSTGE 180 DMNHNHTLGS IGWKKWSRSG SFSSSKHVRS ESDGTLLDGS ALPGNETTIQ SMVSSPSLPN 240 EVKPMKKPRL GWGQGLAKYE KQKVGGSDDS CGRDDIVNGG SGATATHSDS SPKAGPVGSS 300 SPATPTSTTC NSSQRGLEEK LEFCVAKVDD ALIHEPQASP VVFSTKLENL NIDSITSLNS 360 LLTELLQPEE ACSGDTNNTR HTMSNKLQML KSDLLKELLK TDAEIDSSES ELKKISCNIF 420 SRPTQGDSIS PTTLEALDLQ QDVSPSTFKY TIKEFHSDNA VSVMLKSYNS DMPKQISTNC 480 GVVSVDENLV DVDCNGSEKL ENHSNLPIES CEIDQNSESL SCADLEKRLP VEVDCSHVVD 540 KIMDSNRISS GKAAEILSNH LPFRLPLHES KSTVKNVDSK IRGNLAIRKS YLKFKERALT 600 LKYRAFHLLW KEDLPSLSLM KRRSKSQKRC ELRCRSSQNG SESLRTSPRL QIPMPGKTSL 660 VPTKEIVGFT SSDLNIKIHR SFLKMPALIL DETDKRHSQF TTVNGLIDDP FLIEKEKALI 720 NPWTDEEKMV FLEMLGTYGK DFRKVSSFLH HKTTADCVGF YYKNHKSESF EHVRKILKFK 780 KKGQSLPSNN YMVAPGKPWK EDDVASLDIL GIASEIVSNS NDDKIRQKIT SRSVSGGVRD 840 MSISRRPYSR SSSAEFHAEA AADVLTGIGN SISSEGMSSC ITTSVDIGEK KDFLQLDHPF 900 SSEVISHTID EEDSSSDEDF RELASVDWTD TEKSMFVDAF RLFGMDFIQI SHYLETRSKE 960 QCKIFFSKTR KSLGLDTPMP LIDTAIPSND VNDGRSDTDD FCFAEMDSAI CSNNSSSKVD 1020 DFTQSVLKKS NQEFCRMANS CDQIDRNEWF KVRQSNNEEA DTKISCLTSR SINHNDKMVV 1080 ADQFNKLEKS ENIDGLIDVE IQKHNDVLTS QPLSATAEVI VKVKQNLGRE PQLASSQNSD 1140 ISLSCKSKPL GFLDSVLPYN EGRNGMSCTA RKNMPPIQPV SDAIKTTSKK ESSEQLQTKL 1200 MVFGMGKEYR LGLLLCQILL FFSLNILEDL KG*

Sequence ? help Back to Top

Protein Sequence Length: 1233 aa Download sequence Send to blast

MPAEPNPFNR RDFVYRGERR PHERDLTDGF VGVGGGSLSS SPTPWQLDPN HSPSPRRHFS  60
GYYKQVFADE PGINGHNINR SKVEGCRNSY GRYSRPANLR ETHDYSRRSS WNYDDLPRRQ  120
HDPVTTNAQR QVVIPYASPT SPSSSSSYQP QVQLSSLKHQ RQKNDQIVLG DSFNNRSTGE  180
DMNHNHTLGS IGWKKWSRSG SFSSSKHVRS ESDGTLLDGS ALPGNETTIQ SMVSSPSLPN  240
EVKPMKKPRL GWGQGLAKYE KQKVGGSDDS CGRDDIVNGG SGATATHSDS SPKAGPVGSS  300
SPATPTSTTC NSSQRGLEEK LEFCVAKVDD ALIHEPQASP VVFSTKLENL NIDSITSLNS  360
LLTELLQPEE ACSGDTNNTR HTMSNKLQML KSDLLKELLK TDAEIDSSES ELKKISCNIF  420
SRPTQGDSIS PTTLEALDLQ QDVSPSTFKY TIKEFHSDNA VSVMLKSYNS DMPKQISTNC  480
GVVSVDENLV DVDCNGSEKL ENHSNLPIES CEIDQNSESL SCADLEKRLP VEVDCSHVVD  540
KIMDSNRISS GKAAEILSNH LPFRLPLHES KSTVKNVDSK IRGNLAIRKS YLKFKERALT  600
LKYRAFHLLW KEDLPSLSLM KRRSKSQKRC ELRCRSSQNG SESLRTSPRL QIPMPGKTSL  660
VPTKEIVGFT SSDLNIKIHR SFLKMPALIL DETDKRHSQF TTVNGLIDDP FLIEKEKALI  720
NPWTDEEKMV FLEMLGTYGK DFRKVSSFLH HKTTADCVGF YYKNHKSESF EHVRKILKFK  780
KKGQSLPSNN YMVAPGKPWK EDDVASLDIL GIASEIVSNS NDDKIRQKIT SRSVSGGVRD  840
MSISRRPYSR SSSAEFHAEA AADVLTGIGN SISSEGMSSC ITTSVDIGEK KDFLQLDHPF  900
SSEVISHTID EEDSSSDEDF RELASVDWTD TEKSMFVDAF RLFGMDFIQI SHYLETRSKE  960
QCKIFFSKTR KSLGLDTPMP LIDTAIPSND VNDGRSDTDD FCFAEMDSAI CSNNSSSKVD  1020
DFTQSVLKKS NQEFCRMANS CDQIDRNEWF KVRQSNNEEA DTKISCLTSR SINHNDKMVV  1080
ADQFNKLEKS ENIDGLIDVE IQKHNDVLTS QPLSATAEVI VKVKQNLGRE PQLASSQNSD  1140
ISLSCKSKPL GFLDSVLPYN EGRNGMSCTA RKNMPPIQPV SDAIKTTSKK ESSEQLQTKL  1200
MVFGMGKEYR LGLLLCQILL FFSLNILEDL KG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-13	680	771	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-13	680	771	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P3U1	0.0	A0A0K9P3U1_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-89	MYB family protein

Link Out ? help Back to Top
Phytozome	Zosma3g01250.1