PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g01340.1
Common NameZOSMA_3G01340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 167aa    MW: 17816.7 Da    PI: 5.8181
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g01340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.63.2e-5731127197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdr+lPian+srimkk+lP n+ki+kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+ tlGfe+y++plk+yl+kyre+eg
  Zosma3g01340.1  31 VREQDRYLPIANISRIMKKALPLNGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMVTLGFEEYIDPLKAYLQKYRETEG 125
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Zosma3g01340.1 126 DS 127
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-5529138IPR009072Histone-fold
SuperFamilySSF471131.05E-4034146IPR009072Histone-fold
PfamPF008081.5E-2737101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-216583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.0E-2184102No hitNo description
PRINTSPR006152.0E-21103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MADEPSSPAG GGVGSPESGG GAGGDLSPRN VREQDRYLPI ANISRIMKKA LPLNGKIAKD  60
AKETVQECVS EFISFVTSEA SDKCQREKRK TINGDDLLWA MVTLGFEEYI DPLKAYLQKY  120
RETEGDSKGS GKKDSGAQGG SQPGPSVQNY QQGSFGQGMH HTYSQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4830122193NF-YB
4awl_B3e-4830122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4830122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496345.14e-79nuclear transcription factor Y subunit B-1
RefseqXP_017418856.14e-79PREDICTED: nuclear transcription factor Y subunit B-10
RefseqXP_027927125.13e-79nuclear transcription factor Y subunit B-10
SwissprotQ67XJ23e-69NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A0K9P6221e-119A0A0K9P622_ZOSMR; Nuclear transcription factor Y subunit B-3
STRINGXP_007162720.12e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-64nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]