PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g01400.1
Common NameZOSMA_3G01400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 259aa    MW: 30034.9 Da    PI: 9.7217
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g01400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.92.1e-102623190
            FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    +++ Csk+g+++     t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++
  Zosma3g01400.1  2 KRLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRLDrSDNWVTDTVNFDHNHPFT 62
                    6899********9999999********************9999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-7262IPR004330FAR1 DNA binding domain
PfamPF105511.9E-6184219IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKRLLCSKQG SPSLILPPTN GNRRKNGVSR CGCLASIKFK RLDRSDNWVT DTVNFDHNHP  60
FTTPSKIRYL PINRSISHTS KLLFSSLAEV NVLVSQQAAY FSNQLGGVQN MGCMKMDINN  120
MVRDHRIDLK NYDVDLIVEE FEIKKLENNH FFYDLVKDDL GRLKHLFWAD ATMIENYKLF  180
GDSVTFDTTY KTNIYSMVFG MFCGVNHHRK TTIFGSAFLR YLFFTFLLKF PLSFTLYHLL  240
LHSFIFFYFV FMGAVTKM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3V20.0A0A0K9P3V2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-33FAR1-related sequence 5