PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma3g01570.1

Common Name

ZOSMA_3G01570

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 212aa MW: 24054.1 Da PI: 8.4591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma3g01570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	7	55	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ rE++ Rd++N+ f +L + l ++ +sKa+iL A++ +++L Zosma3g01570.1 7 KIHKSHREKQKRDHLNEVFLKLERTLEDV----KQNNSKASILNDATKILRDL 55 567899*******************97....699**********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-8	4	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.357	5	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-11	6	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.60E-4	6	55	No hit	No description
Pfam	PF00010	1.4E-4	7	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTEITKKIHK SHREKQKRDH LNEVFLKLER TLEDVKQNNS KASILNDATK ILRDLIVQVE 60 SLRKENANLI TETQYVTTER DELKDEVSTL WTELDKLKNE LSQMGHVDPS WYNVTNKAAS 120 LVPVDNSIES HSYLGLRIKT SVLNPPYVTR PHARYPNSLD SRPQRPLFQH MIATIGPQSS 180 NSSTSTTICN NSTTGSREME GSSSPRELQL L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P3X1	1e-153	A0A0K9P3X1_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	8e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma3g01570.1