PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g01690.1
Common NameZOSMA_3G01690
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 279aa    MW: 31538.8 Da    PI: 6.5037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g01690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++ ++G g+W++ ++  g++R++k+c++rw +yl
   Zosma3g01690.1 16 KGPWTSEEDDKLVGYIDKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
   Zosma3g01690.1  69 RGKFSPEEEQTILNLHSILGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 114
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.9671163IPR017930Myb domain
SuperFamilySSF466891.61E-3113110IPR009057Homeodomain-like
SMARTSM007171.2E-121565IPR001005SANT/Myb domain
PfamPF002491.2E-151663IPR001005SANT/Myb domain
CDDcd001675.16E-101863No hitNo description
PROSITE profilePS5129426.63864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2867119IPR009057Homeodomain-like
SMARTSM007171.9E-1668116IPR001005SANT/Myb domain
PfamPF002492.2E-1669114IPR001005SANT/Myb domain
CDDcd001672.08E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRPPPSFCH DDNLKKGPWT SEEDDKLVGY IDKHGHGSWR ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSPEEEQTI LNLHSILGNK WSAIAGHLPG RTDNEIKNFW NTHLKKKLIQ  120
MGFDPMTHLP RTDIFSSLPH LLALANLGEM MYRSPWEDHS VQMAKLQCLQ YLTATTSTSS  180
PTTLNLGNME PVFLPPPSIL EQQQPQQLQM IPASIINETN DHDDQLLDTL GNRYNTQVQQ  240
TPSLMNNTGD VCSTFSYDVC GTPNSLWNDL FLDDILLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28131184108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939659.11e-102transcription factor MYB93
SwissprotQ9S9Z21e-88MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0K9P6810.0A0A0K9P681_ZOSMR; Myb domain protein 9
STRINGEOX920941e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-88myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]