PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma3g01920.1

Common Name

ZOSMA_3G01920

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 260aa MW: 27401.3 Da PI: 9.0607

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma3g01920.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.5	1.3e-37	25	83	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k+++l cprC+stntkfCy+nny++sqPr+fCk+CrryWtkGG+lrn+PvGg +rk+++ Zosma3g01920.1 25 KQQNLMCPRCQSTNTKFCYFNNYNMSQPRHFCKTCRRYWTKGGSLRNIPVGGNSRKKRA 83 78999***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-22	25	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.388	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MNGETSAAEA AAVVKEEEEN GDGKKQQNLM CPRCQSTNTK FCYFNNYNMS QPRHFCKTCR 60 RYWTKGGSLR NIPVGGNSRK KRAFLGGNAG AAGNNSNREL GGGENRTARR VVMNSHLTAR 120 SGGMALMMVS SSITPTLTPT PNPASILGHV GLDIMGSGGR RFGHLLEGNR DYGNLLCPSA 180 GVGQMQITPT VNSDNSGEIN NNNSFIESPS VSTYHFPPHD DFTFWSTGGG VGSNGTTGSG 240 TGTGNGNGGG LWSDVPPRF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P670	0.0	A0A0K9P670_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma3g01920.1