PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g02000.1
Common NameZOSMA_3G02000
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 276aa    MW: 30620.6 Da    PI: 6.9672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g02000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++W +eE+e l  +v+++G g W+tI +          R+  ++k++w+++
   Zosma3g02000.1  5 KQKWLAEEEEALRAGVEKHGAGKWRTIQKDPEfshclASRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.296161IPR017930Myb domain
SuperFamilySSF466896.63E-15259IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-13556IPR009057Homeodomain-like
CDDcd116601.69E-19656No hitNo description
PfamPF139212.4E-7863No hitNo description
PROSITE profilePS5150418.478103177IPR005818Linker histone H1/H5, domain H15
SMARTSM005269.0E-6110172IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.27E-10115176IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-10116176IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.7E-8116172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGAPKQKWLA EEEEALRAGV EKHGAGKWRT IQKDPEFSHC LASRSNIDLK DKWRNLSVSA  60
SGQSSREKSR TPKVKALPAI PFSTAETSTL LVPSKNDGLT KDLHDNVEDT KLHASFIIEA  120
ISTLQEPNGA DILEISKFIQ EKHAVSSNFQ RLLSSKLRRL AVQGRIEKVH GGYKVKDLAN  180
RTSTVKPKSL TQRTKLVQSS SSVPVVDTLE EIFASAAYRV AEAEAKSFFA AEATKEFERV  240
AKMAEETEVM LQLAEEIHQK CSHSDVFVLE FEDED*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910098.11e-108single myb histone 4
TrEMBLA0A0K9P6A70.0A0A0K9P6A7_ZOSMR; Histone H1-like protein
STRINGXP_008797902.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.27e-51MYB_related family protein