PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma401g00140.1

Common Name

ZOSMA_401G00140

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

SRS

Protein Properties

Length: 272aa MW: 30350.6 Da PI: 8.3351

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma401g00140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	199.1	1.3e-61	71	236	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklss 93 +++CqdCGnqakkdC ++RCRtCCks++f+C+thvkstWvp+a+rre+q+ aa+ +++a+ +++ sk++r l ++++++++ss + + Zosma401g00140.1 71 AAITCQDCGNQAKKDCLYRRCRTCCKSQEFNCTTHVKSTWVPTARRREKQKISAAMVTTSAS-TTSGGSKKQRLLvdaSNNSHTSTSSHSFDT 162 5689*******************************************9998887776665.455556666655343333333333333333 PP DUF702 94 aeskkeletss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+++ ++++ lP +++++a+f+cvrv+s+ddge+e+aYq+ v+i Gh+fkG+LydqG+++ Zosma401g00140.1 163 SSSHHQQQQRRrshhhqdagfrenLPLQIQAPALFKCVRVTSIDDGEDEYAYQAMVNIRGHMFKGFLYDQGIDN 236 33332222222567899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.9E-57	72	235	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-26	74	116	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-26	187	234	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MFQRYRLWQQ QQEEEEVENP NLNLNPNLSS SVNPNFGSVI LNDPSSRVGG AITTAAMFPP 60 CNIVSSTSVA AAITCQDCGN QAKKDCLYRR CRTCCKSQEF NCTTHVKSTW VPTARRREKQ 120 KISAAMVTTS ASTTSGGSKK QRLLVDASNN SHTSTSSHSF DTSSSHHQQQ QRRRSHHHQD 180 AGFRENLPLQ IQAPALFKCV RVTSIDDGED EYAYQAMVNI RGHMFKGFLY DQGIDNPGEE 240 EYTRTRSSNN TTLQNLSELH LGGVSGTRWE R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085642.1	3e-67	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_020585827.1	2e-68	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	8e-51	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0K9P5P0	0.0	A0A0K9P5P0_ZOSMR; Lateral root primordium (LRP) protein-related
STRING	EMT11284	4e-67	(Aegilops tauschii)
STRING	MLOC_14639.1	4e-67	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-46	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Zosma401g00140.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]