PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma41g00590.1
Common NameZOSMA_41G00590
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 117aa    MW: 13005.5 Da    PI: 9.4116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma41g00590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-191161255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g++ AeIrd +    +  r +lg+f+tae+Aa+a+++a+ k++g
  Zosma41g00590.1 11 KYRGVRRRP-WGKYGAEIRDSTR---QgVRLWLGTFDTAEDAARAYDRAAYKMRG 61
                     8********.**********322...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-131161IPR001471AP2/ERF domain
SMARTSM003803.3E-381175IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-241170IPR016177DNA-binding domain
CDDcd000186.82E-211169No hitNo description
PROSITE profilePS5103223.8021169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-311170IPR001471AP2/ERF domain
PRINTSPR003671.3E-111223IPR001471AP2/ERF domain
PRINTSPR003671.3E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEGGDSDRVV KYRGVRRRPW GKYGAEIRDS TRQGVRLWLG TFDTAEDAAR AYDRAAYKMR  60
GSLAVLNFPR ESPASSSHSM ISTAGASSSR GKDVIEFEYL DDKVLEDMLS QEHAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-331110414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026453213.11e-45ethylene-responsive transcription factor 14-like
SwissprotQ9LTC52e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9P4W47e-79A0A0K9P4W4_ZOSMR; Uncharacterized protein
STRINGGLYMA15G17090.11e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]