PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma41g01140.1
Common NameZOSMA_41G01140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 235aa    MW: 26004.4 Da    PI: 5.1787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma41g01140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1876127155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +gy+GVr ++ +g+++AeIrd + ng   r++lg+f ++eeAa a+++a+  ++g
  Zosma41g01140.1  76 KGYRGVRKRP-WGKFAAEIRDSTRNG--VRIWLGTFKSEEEAAMAYDQAAFLMRG 127
                      59********.**********44465..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-3076136No hitNo description
PfamPF008473.0E-1277127IPR001471AP2/ERF domain
SMARTSM003806.2E-3877141IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2377137IPR016177DNA-binding domain
PROSITE profilePS5103222.60377135IPR001471AP2/ERF domain
PRINTSPR003671.1E-97889IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-2978135IPR001471AP2/ERF domain
PRINTSPR003671.1E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEFVDYSFIH DETNNQSYSG SAPPLENLPF VQNDSGDMMI LDMLKSSSSS TCCVPSLAGI  60
CHRKPLAECS LEEKFKGYRG VRKRPWGKFA AEIRDSTRNG VRIWLGTFKS EEEAAMAYDQ  120
AAFLMRGTLA VLNFPVELVA ESVREANYVT TDGDGSAAVK ALKMKHSMRR RKRKTSSGLD  180
VNDKKNNDVG GTGLQMFDAD QDHVIMELED LGSAYLEDLL NMSELPSKNP QITN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2876138163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883413.16e-51ethylene-responsive transcription factor 1B
TrEMBLA0A0K9P2J71e-175A0A0K9P2J7_ZOSMR; Ethylene-responsive transcription factor 1B
STRINGscaffold_302806.12e-50(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-44ethylene response factor 1