PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma425g00120.1
Common NameZOSMA_425G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LSD
Protein Properties Length: 249aa    MW: 27331.6 Da    PI: 8.3652
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma425g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD125.52.2e-08171194124
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                       Cg+C  l sYPr A++V+C++C t
  Zosma425g00120.1 171 CGSCNELVSYPRWAKLVKCPCCET 194
                       **********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-9168198IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-6171194IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:2.20.25.1006.6E-5187234IPR023407Ribosomal protein S27e, zinc-binding domain
TIGRFAMsTIGR010530.0021207237IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTKSLWVQIC PPRGPIVVYR CSLLKSGKKV VMGGERERAM AGIRQLPGPE ENPNSSPPQS  60
PIEPPGWEKS VSYTVIVESI DSQQSRTQPG ISGLEKKVSF PTEVDVVEIR HSKKPRSSKW  120
DKMPSPPTDS QSLPPFLTTE QSPIKSQMKK PEPASVKAWS PTDCDVGQMV CGSCNELVSY  180
PRWAKLVKCP CCETANVVFD EHEYGTVKCG KCCIWLMYPS VGAAALSVRC STCRFVTEIG  240
DQSMRPPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P2E11e-179A0A0K9P2E1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-21lsd one like 2