PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma427g00050.1

Common Name

ZOSMA_427G00050

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 213aa MW: 22340.8 Da PI: 6.276

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma427g00050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	159.1	6.7e-50	61	153	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d++lPianv+rimkk+lP+nakisk+aket+qec+sefisfv+seasdkc++e+rkt+ngdd++wa++tlGf+ +v+p+k yl+kyr+ e+++ Zosma427g00050.1 61 DQLLPIANVGRIMKKILPSNAKISKEAKETMQECASEFISFVASEASDKCNKERRKTVNGDDICWAFGTLGFDSFVQPMKRYLNKYRDYESKR 153 899*************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-46	60	164	IPR009072	Histone-fold
SuperFamily	SSF47113	1.77E-36	61	158	IPR009072	Histone-fold
Pfam	PF00808	3.8E-27	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-17	91	109	No hit	No description
PRINTS	PR00615	3.8E-17	110	128	No hit	No description
PRINTS	PR00615	3.8E-17	129	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLKSSSANEV RSGAYEKSDP SEQKMELIQV SNPCVRIIDG GSSSAAAETG GGGGGGGGGG 60 DQLLPIANVG RIMKKILPSN AKISKEAKET MQECASEFIS FVASEASDKC NKERRKTVNG 120 DDICWAFGTL GFDSFVQPMK RYLNKYRDYE SKRAAAAAAT AAAEATLFRH AGSGGGDDDH 180 NQDGSGDRHF KMDLAGPSDN NTTTLSFNVL GK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-38	61	148	5	92	Transcription factor HapC (Eurofung)
4g92_B	8e-38	61	148	5	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086005.1	3e-55	nuclear transcription factor Y subunit B-1-like
Swissprot	Q75IZ7	2e-45	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0K9P4I0	1e-155	A0A0K9P4I0_ZOSMR; Nuclear transcription factor Y subunit B-5
STRING	Aquca_017_00275.1	9e-53	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	8e-48	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Zosma427g00050.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]